Computational Resources

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  1. Collaborative Workspaces and Deployable Code
  2. Computing Resources

Discover hands-on repositories, workspaces, and computational resources to assist you in your analysis.

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Collaborative Workspaces and Deployable Code

All of Us Workspaces

All of Us (AoU) public workspaces require an @researchallofus.org login.

The All of Us Research Program is one of the largest biomedical data resources of its kind. The Research Hub is home to All of Us data, research tools, and research projects.

Public and community workspaces are shared as read-only workspaces for the entire Researcher Workbench community to use in their analysis.

Terra Public Workspaces

Terra requires a Terra Workspaces login. 

ScHARe Collaborative Workspaces

ScHARe is powered by Terra, an open-source data analysis platform based on Google Cloud Platform. Using ScHARe’s Terra resources, researchers and their collaborators can access and cross-link the same publicly available or controlled-access data. They can also create secure online spaces for collaboratively running large-scale analyses and sharing reproducible results and resources.

ScHARe supports interactive analysis tools such as Jupyter Notebooks. The platform also supports Dockstore as a repository for Docker-based analysis workflows that allow users to automate basic steps in their analyses.

MIDRC Algorithms and Code

The Medical Imaging & Data Resource Center (MIDRC) Data Commons supports the management, analysis, and sharing of medical imaging data for the improvement of patient outcomes. The data in MIDRC are open access in order to foster machine learning innovation.

This link takes you to algorithms developed by MIDRC for public use.

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Computing Resources

STRIDES Cloud Computing Resource

The STRIDES Initiative aims to help NIH and its institutions accelerate biomedical research by reducing barriers in utilizing commercial cloud services. This initiative aims to harness the power of the cloud to accelerate biomedical discovery. NIH and NIH-funded researchers can take advantage of STRIDES benefits.

AnVIL

The National Human Genome Research Institute’s Genomic Data Science Analysis, Visualization, and Informatics Lab-Space, or AnVIL, inverts the traditional model, providing a cloud environment for the analysis of large genomic and related datasets. By providing a unified environment for data management and compute, AnVIL eliminates the need for data movement, allows for active threat detection and monitoring, and provides elastic, shared computing resources that can be acquired by researchers as needed.

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Last Reviewed
December 2024